Transcript: LINC02260:5

Basic information

LNCipedia transcript ID: LINC02260:5 
HGNC Gene Symbol: LINC02260    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2260
Ensembl Gene ID: ENSG00000250456
Ensembl Transcript ID: ENST00000508484
RefSeq ID: NR_134657
Location (hg19): chr4:55469378-55473298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2216 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000508484; ENST00000508484.1; AC006552.1-001; OTTHUMT00000363888.1; NONHSAT096422; NR_134657.1
Alternative gene names: ENSG00000250456; AC006552.1; ENSG00000250456.1; OTTHUMG00000161130.1; LINC02260; LOC339978


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2841 non-coding 
CPAT coding probability 5.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02260:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDR-2:2
3.1 lnc-KDR-2:1
4.0 lnc-KDR-2:1
4.1 lnc-KDR-2:1
5.0 lnc-KDR-2:1
5.1 LINC02260:3
5.2 LINC02260:5