Transcript: LINC02271:5

Basic information

LNCipedia transcript ID: LINC02271:5 
HGNC Gene Symbol: LINC02271    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2271
Ensembl Gene ID: ENSG00000240152
Ensembl Transcript ID: ENST00000506379
Location (hg19): chr4:62009374-62019447
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007542; ENST00000506379; ENST00000506379.1; RP11-16N2.1-001; OTTHUMT00000361594.1; NONHSAT096606
Alternative gene names: XLOC_003554; linc-LPHN3-1; ENSG00000240152; RP11-16N2.1; ENSG00000240152.2; OTTHUMG00000160657.1; LINC02271


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.783 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02271:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPHN3-1:1
3.1 lnc-LPHN3-1:1
4.0 lnc-LPHN3-1:1
4.1 lnc-LPHN3-1:1
5.0 lnc-LPHN3-1:1
5.1 LINC02271:2
5.2 LINC02271:5