Transcript: LINC02289:28

Basic information

LNCipedia transcript ID: LINC02289:28 
LNCipedia gene ID: LINC02289
Ensembl Gene ID: ENSG00000258473
Ensembl Transcript ID: ENST00000554043
Location (hg19): chr14:77514515-77552789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554043; ENST00000554043.1; RP11-7F17.4-001; OTTHUMT00000414301.1; NONHSAT037952
Alternative gene names: ENSG00000258473; RP11-7F17.4; ENSG00000258473.1; OTTHUMG00000171580.1; AC007686.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.5889 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02289:28 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRF2BPL-2:2
3.1 lnc-IRF2BPL-2:2
4.0 lnc-IRF2BPL-2:2
4.1 lnc-IRF2BPL-1:11
5.0 lnc-IRF2BPL-1:11
5.1 LINC02289:5
5.2 LINC02289:28