Transcript: LINC02289:37

Basic information

LNCipedia transcript ID: LINC02289:37 
HGNC Gene Symbol: LINC02289    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2289
Ensembl Gene ID: ENSG00000258819
Ensembl Transcript ID: ENST00000557526
RefSeq ID: NR_110553
Location (hg19): chr14:77535523-77542534
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1817 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00022377; ENST00000557526; ENST00000557526.1; RP11-7F17.3-001; OTTHUMT00000414302.1; NONHSAT037953; NR_110553; NR_110553.1
Alternative gene names: XLOC_011081; linc-C14orf4-2; ENSG00000258819; RP11-7F17.3; ENSG00000258819.1; OTTHUMG00000171581.1; LINC02289; LOC102724190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7578 non-coding 
CPAT coding probability 4.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02289:37 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRF2BPL-1:5
3.1 lnc-IRF2BPL-1:5
4.0 lnc-IRF2BPL-1:5
4.1 lnc-IRF2BPL-1:5
5.0 lnc-IRF2BPL-1:5
5.1 LINC02289:14
5.2 LINC02289:37