Transcript: LINC02289:46

Basic information

LNCipedia transcript ID: LINC02289:46 
HGNC Gene Symbol: LINC02289    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2289
Ensembl Gene ID: ENSG00000258819
Ensembl Transcript ID: ENST00000556781
Location (hg19): chr14:77540885-77542485
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 861 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556781; ENST00000556781.1; RP11-7F17.3-003; OTTHUMT00000414304.1; NONHSAT037958
Alternative gene names: ENSG00000258819; RP11-7F17.3; ENSG00000258819.1; OTTHUMG00000171581.1; LINC02289


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.3388 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02289:46 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRF2BPL-1:6
3.1 lnc-IRF2BPL-1:6
4.0 lnc-IRF2BPL-1:6
4.1 lnc-IRF2BPL-1:6
5.0 lnc-IRF2BPL-1:6
5.1 LINC02289:23
5.2 LINC02289:46