Transcript: LINC02293:20

Basic information

LNCipedia transcript ID: LINC02293:20 
HGNC Gene Symbol: LINC02293    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2293
Ensembl Gene ID: ENSG00000257185
Ensembl Transcript ID: ENST00000548335
Location (hg19): chr14:27278623-27289909
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548335; ENST00000548335.1; RP11-626P14.2-001; OTTHUMT00000409033.1; NONHSAT036120
Alternative gene names: ENSG00000257185; RP11-626P14.2; ENSG00000257185.1; OTTHUMG00000170416.1; LINC02293


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.9674 non-coding 
CPAT coding probability 5.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02293:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXG1-5:5
3.1 lnc-FOXG1-5:5
4.0 lnc-FOXG1-5:5
4.1 lnc-FOXG1-5:5
5.0 lnc-FOXG1-5:5
5.1 LINC02293:9
5.2 LINC02293:20