Transcript: LINC02354:9

Basic information

LNCipedia transcript ID: LINC02354:9 
HGNC Gene Symbol: LINC02354    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2354
Ensembl Gene ID: ENSG00000257488
Ensembl Transcript ID: ENST00000550909
Location (hg19): chr12:48225132-48228498
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550909; ENST00000550909.1; RP5-1057I20.2-004; OTTHUMT00000406430.1; NONHSAT027954
Alternative gene names: ENSG00000257488; RP5-1057I20.2; ENSG00000257488.1; OTTHUMG00000169889.1; ENSG00000257488.5; LINC02354


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -514.9708 non-coding 
CPAT coding probability 36.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02354:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC48A1-2:3
3.1 lnc-SLC48A1-2:3
4.0 lnc-SLC48A1-2:3
4.1 lnc-SLC48A1-2:3
5.0 lnc-SLC48A1-2:3
5.1 LINC02354:4
5.2 LINC02354:9