Transcript: LINC02365:12

Basic information

LNCipedia transcript ID: LINC02365:12 
HGNC Gene Symbol: LINC02365    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2365
Ensembl Gene ID: ENSG00000254233
Ensembl Transcript ID: ENST00000519173
Location (hg19): chr4:185540200-185546096
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519173; ENST00000519173.1; RP11-242J7.1-002; OTTHUMT00000374072.1; NONHSAT099555
Alternative gene names: ENSG00000254233; RP11-242J7.1; ENSG00000254233.1; OTTHUMG00000163540.1; LINC02365


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5412 non-coding 
CPAT coding probability 9.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02365:12 no no no no

Available literature

  1. Iyer (2015), The landscape of long noncoding RNAs in the human transcriptome., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CASP3-1:2
3.1 lnc-CASP3-1:2
4.0 lnc-CASP3-1:2
4.1 lnc-CASP3-1:2
5.0 lnc-CASP3-1:2
5.1 LINC02365:4
5.2 LINC02365:12