Transcript: LINC02379:5

Basic information

LNCipedia transcript ID: LINC02379:5 
HGNC Gene Symbol: LINC02379    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2379
Ensembl Gene ID: ENSG00000251649
Ensembl Transcript ID: ENST00000505741
Location (hg19): chr4:126991863-126993159
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007614; ENST00000505741; ENST00000505741.1; RP11-318I4.1-001; OTTHUMT00000363950.1; NONHSAT098222
Alternative gene names: XLOC_003684; linc-INTU-1; ENSG00000251649; RP11-318I4.1; ENSG00000251649.1; OTTHUMG00000161146.1; LINC02379


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.867 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02379:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAT4-2:1
3.1 lnc-FAT4-2:1
4.0 lnc-FAT4-2:1
4.1 lnc-FAT4-2:1
5.0 lnc-FAT4-2:1
5.1 LINC02379:3
5.2 LINC02379:5