Transcript: LINC02390:3

Basic information

LNCipedia transcript ID: LINC02390:3 
HGNC Gene Symbol: LINC02390    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2390
Ensembl Gene ID: ENSG00000256582
Ensembl Transcript ID: ENST00000541404
Location (hg19): chr12:9856673-9861946
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541404; ENST00000541404.1; RP11-75L1.1-001; OTTHUMT00000399496.1; NONHSAT026847
Alternative gene names: ENSG00000256582; RP11-75L1.1; ENSG00000256582.1; OTTHUMG00000168371.1; LINC02390


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8875 non-coding 
CPAT coding probability 15.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02390:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLEC2D-1:1
3.1 lnc-CLEC2D-1:1
4.0 lnc-CLEC2D-1:1
4.1 lnc-CLEC2D-1:1
5.0 lnc-CLEC2D-1:1
5.1 LINC02390:2
5.2 LINC02390:3