Transcript: LINC02400:21

Basic information

LNCipedia transcript ID: LINC02400:21 
LNCipedia gene ID: LINC02400
Location (hg19): chr12:42157980-42159368
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020382; NONHSAT027757
Alternative gene names: XLOC_009714; linc-PPHLN1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.5096 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02400:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDZRN4-1:6
3.1 lnc-PDZRN4-1:6
4.0 lnc-PDZRN4-1:6
4.1 lnc-PDZRN4-1:6
5.0 lnc-PDZRN4-1:6
5.1 LINC02400:9
5.2 LINC02400:21