Transcript: LINC02400:22

Basic information

LNCipedia transcript ID: LINC02400:22 
HGNC Gene Symbol: LINC02400    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2400
Ensembl Gene ID: ENSG00000257784
Ensembl Transcript ID: ENST00000552712
RefSeq ID: NR_135041
Location (hg19): chr12:42157991-42159383
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000552712.1; RP11-630C16.1-002; OTTHUMT00000403774.1; NR_135041.1
Alternative gene names: ENSG00000257784.1; RP11-630C16.1; OTTHUMG00000169376.1; LINC02400; LOC101927038


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.4283 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02400:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZRN4-1:7
4.0 lnc-PDZRN4-1:7
4.1 lnc-PDZRN4-1:7
5.0 lnc-PDZRN4-1:7
5.1 LINC02400:10
5.2 LINC02400:22