Transcript: LINC02402:4

Basic information

LNCipedia transcript ID: LINC02402:4 
HGNC Gene Symbol: LINC02402    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2402
Ensembl Gene ID: ENSG00000257510
Ensembl Transcript ID: ENST00000550337
RefSeq ID: NR_110042
Location (hg19): chr12:43009305-43040300
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1212 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000550337; ENST00000550337.1; RP11-609L23.1-001; OTTHUMT00000404160.2; NONHSAT027784; NR_110042; NR_110042.1
Alternative gene names: ENSG00000257510; RP11-609L23.1; ENSG00000257510.1; OTTHUMG00000169457.2; LINC02402; LOC101927058


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8937 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02402:4 no no no no

Available literature

  1. Li (2017), The Diagnostic Value of Whole Blood lncRNA ENST00000550337.1 for Pre-Diabetes and Type 2 Diabetes Mellitus., Exp. Clin. Endocrinol. Diabetes


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRICKLE1-1:1
3.1 lnc-PRICKLE1-1:1
4.0 lnc-PRICKLE1-1:1
4.1 lnc-PRICKLE1-1:1
5.0 lnc-PRICKLE1-1:1
5.1 LINC02402:2
5.2 LINC02402:4