Transcript: LINC02417:5

Basic information

LNCipedia transcript ID: LINC02417:5 
HGNC Gene Symbol: LINC02417    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2417
Ensembl Gene ID: ENSG00000257048
Ensembl Transcript ID: ENST00000542449
Location (hg19): chr12:3476999-3480512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542449; ENST00000542449.1; RP11-476M19.2-001; OTTHUMT00000398635.1; NONHSAT025516
Alternative gene names: ENSG00000257048; RP11-476M19.2; ENSG00000257048.1; OTTHUMG00000168183.1; LINC02417


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.4972 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02417:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRMT8-1:1
3.1 lnc-PRMT8-1:1
4.0 lnc-PRMT8-1:1
4.1 lnc-PRMT8-1:1
5.0 lnc-PRMT8-1:1
5.1 LINC02417:2
5.2 LINC02417:5