Transcript: LINC02440:10

Basic information

LNCipedia transcript ID: LINC02440:10 
HGNC Gene Symbol: LINC02440    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2440
Ensembl Gene ID: ENSG00000255618
Ensembl Transcript ID: ENST00000545276
Location (hg19): chr12:119210837-119212942
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 680 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545276; ENST00000545276.1; RP11-357K6.1-001; OTTHUMT00000401583.1; NONHSAT031048
Alternative gene names: ENSG00000255618; RP11-357K6.1; ENSG00000255618.1; OTTHUMG00000168911.1; LINC02440


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.0293 non-coding 
CPAT coding probability 21.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02440:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAOK3-4:1
3.1 lnc-TAOK3-4:1
4.0 lnc-TAOK3-4:1
4.1 lnc-TAOK3-4:1
5.0 lnc-TAOK3-4:1
5.1 LINC02440:2
5.2 LINC02440:10