Transcript: LINC02454:14

Basic information

LNCipedia transcript ID: LINC02454:14 
LNCipedia gene ID: LINC02454
Location (hg19): chr12:65996600-66010730
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4623 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020456; NONHSAT029197
Alternative gene names: XLOC_009788; linc-HMGA2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.7662 non-coding 
CPAT coding probability 55.70% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02454:14 no no no no

Available literature

  1. Deng (2015), Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge., J. Exp. Clin. Cancer Res.
  2. Liang (2015), The lncRNA H19 promotes epithelial to mesenchymal transition by functioning as miRNA sponges in colorectal cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSRB3-2:2
3.1 lnc-MSRB3-2:2
4.0 lnc-MSRB3-2:2
4.1 lnc-MSRB3-2:2
5.0 lnc-MSRB3-2:2
5.1 LINC02454:3
5.2 LINC02454:14