Transcript: LINC02461:3

Basic information

LNCipedia transcript ID: LINC02461:3 
HGNC Gene Symbol: LINC02461    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2461
Ensembl Gene ID: ENSG00000258331
Ensembl Transcript ID: ENST00000553211
Location (hg19): chr12:43549118-43556913
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 836 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553211; ENST00000553211.1; RP11-118A3.1-001; OTTHUMT00000403642.1; NONHSAT027796
Alternative gene names: ENSG00000258331; RP11-118A3.1; ENSG00000258331.1; OTTHUMG00000169352.1; LINC02461


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1209 non-coding 
CPAT coding probability 7.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02461:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRAK4-1:1
3.1 lnc-IRAK4-1:1
4.0 lnc-IRAK4-1:1
4.1 lnc-IRAK4-1:1
5.0 lnc-IRAK4-1:1
5.1 LINC02461:2
5.2 LINC02461:3