Transcript: LINC02471:8

Basic information

LNCipedia transcript ID: LINC02471:8 
HGNC Gene Symbol: LINC02471    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2471
Ensembl Gene ID: ENSG00000223914
Ensembl Transcript ID: ENST00000457989
Location (hg19): chr12:40550041-40561414
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020232; ENST00000457989; ENST00000457989.1; AC079630.2-001; OTTHUMT00000132852.1; NONHSAT027721
Alternative gene names: XLOC_009712; linc-LRRK2; ENSG00000223914; AC079630.2; ENSG00000223914.1; OTTHUMG00000059745.2; ENSG00000223914.2; LINC02471


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.7484 non-coding 
CPAT coding probability 3.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02471:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRK2-1:1
3.1 lnc-LRRK2-1:1
4.0 lnc-LRRK2-1:1
4.1 lnc-LRRK2-1:1
5.0 lnc-LRRK2-1:1
5.1 LINC02471:4
5.2 LINC02471:8