Transcript: LINC02476:16

Basic information

LNCipedia transcript ID: LINC02476:16 
HGNC Gene Symbol: LINC02476    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2476
Ensembl Gene ID: ENSG00000225546
Ensembl Transcript ID: ENST00000426413
Location (hg19): chr7:119390869-119547429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1577 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013243; ENST00000426413; ENST00000426413.1; RP11-328J2.1-001; OTTHUMT00000346759.1; NONHSAT122987
Alternative gene names: XLOC_006580; linc-CTTNBP2-5; ENSG00000225546; RP11-328J2.1; ENSG00000225546.1; OTTHUMG00000156951.1; ENSG00000225546.5; LVCAT5; LINC02476


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.6614 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02476:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN12-3:1
3.1 lnc-TSPAN12-4:1
4.0 lnc-TSPAN12-4:1
4.1 lnc-TSPAN12-4:1
5.0 lnc-TSPAN12-4:1
5.1 LINC02476:2
5.2 LINC02476:16