Transcript: LINC02480:8

Basic information

LNCipedia transcript ID: LINC02480:8 
HGNC Gene Symbol: LINC02480    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2480
Ensembl Gene ID: ENSG00000251040
Ensembl Transcript ID: ENST00000511875
Location (hg19): chr4:52910971-52913120
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 612 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007527; ENST00000511875; ENST00000511875.1; RP11-535C7.1-001; OTTHUMT00000361472.1; NONHSAT096354
Alternative gene names: XLOC_003536; linc-SPATA18; ENSG00000251040; RP11-535C7.1; ENSG00000251040.1; OTTHUMG00000160622.1; LINC02480


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.6117 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02480:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA18-1:1
3.1 lnc-SPATA18-1:1
4.0 lnc-SPATA18-1:1
4.1 lnc-SPATA18-1:1
5.0 lnc-SPATA18-1:1
5.1 LINC02480:3
5.2 LINC02480:8