Transcript: LINC02482:23

Basic information

LNCipedia transcript ID: LINC02482:23 
HGNC Gene Symbol: LINC02482    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2482
Ensembl Gene ID: ENSG00000251580
Ensembl Transcript ID: ENST00000513179
Location (hg19): chr4:6672455-6675550
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 406 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007712; ENST00000513179.1; RP11-539L10.3-002; OTTHUMT00000368686.1; NONHSAT095009
Alternative gene names: XLOC_003870; linc-PPP2R2C-1; ENSG00000251580.1; RP11-539L10.3; OTTHUMG00000162381.1; LINC02482; ENSG00000251580.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -0.7003 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02482:23 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRFAP1L1-2:3
3.1 lnc-MRFAP1L1-2:3
4.0 lnc-MRFAP1L1-2:3
4.1 lnc-MRFAP1L1-2:3
5.0 lnc-MRFAP1L1-2:3
5.1 LINC02482:12
5.2 LINC02482:23