Transcript: LINC02485:11

Basic information

LNCipedia transcript ID: LINC02485:11 
HGNC Gene Symbol: LINC02485    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2485
Ensembl Gene ID: ENSG00000248456
Ensembl Transcript ID: ENST00000511899
Location (hg19): chr4:136034060-136044892
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 770 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007838; ENST00000511899; ENST00000511899.1; RP11-553P9.3-001; OTTHUMT00000364194.1
Alternative gene names: XLOC_004085; linc-PABPC4L-5; ENSG00000248456; RP11-553P9.3; ENSG00000248456.1; OTTHUMG00000161216.1; LINC02485


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.4317 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02485:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH18-6:2
3.1 lnc-PCDH18-8:2
4.0 lnc-PCDH18-8:2
4.1 lnc-PCDH18-8:2
5.0 lnc-PCDH18-8:2
5.1 LINC02485:6
5.2 LINC02485:11