Transcript: LINC02487:6

Basic information

LNCipedia transcript ID: LINC02487:6 
HGNC Gene Symbol: LINC02487    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2487
Ensembl Gene ID: ENSG00000203688
Ensembl Transcript ID: ENST00000400831
RefSeq ID: NR_117092
Location (hg19): chr6:168080306-168084467
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2557 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011242; ENST00000400831; ENST00000400831.2; RP11-351J23.1-001; OTTHUMT00000043141.1; NONHSAT116108; NR_117092; NR_117092.1
Alternative gene names: XLOC_005923; linc-TCP10-2; ENSG00000203688; RP11-351J23.1; ENSG00000203688.4; OTTHUMG00000016027.1; LINC02487; LOC441178; ENSG00000203688.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4577 non-coding 
CPAT coding probability 6.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02487:6 no no no no

Available literature

  1. Feng (2017), Transcriptome analysis reveals differentially expressed lncRNAs between oral squamous cell carcinoma and healthy oral mucosa., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf123-2:2
3.1 lnc-C6orf123-2:2
4.0 lnc-C6orf123-2:2
4.1 lnc-C6orf123-2:2
5.0 lnc-C6orf123-2:2
5.1 LINC02487:4
5.2 LINC02487:6