Transcript: LINC02493:5

Basic information

LNCipedia transcript ID: LINC02493:5 
HGNC Gene Symbol: LINC02493    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2493
Ensembl Gene ID: ENSG00000250819
Ensembl Transcript ID: ENST00000509964
Location (hg19): chr4:17173380-17187682
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1704 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509964; ENST00000509964.1; RP11-576E20.1-001; OTTHUMT00000359704.1; NONHSAT095700
Alternative gene names: ENSG00000250819; RP11-576E20.1; ENSG00000250819.1; OTTHUMG00000160219.1; LINC02493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.5043 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02493:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LDB2-2:1
3.1 lnc-LDB2-2:1
4.0 lnc-LDB2-2:1
4.1 lnc-LDB2-2:1
5.0 lnc-LDB2-2:1
5.1 LINC02493:2
5.2 LINC02493:5