Transcript: LINC02494:8

Basic information

LNCipedia transcript ID: LINC02494:8 
HGNC Gene Symbol: LINC02494    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2494
Ensembl Gene ID: ENSG00000250340
Ensembl Transcript ID: ENST00000509824
RefSeq ID: NR_133943
Location (hg19): chr4:59390680-59402493
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007763; ENST00000509824; ENST00000509824.1; RP11-577G20.1-001; OTTHUMT00000365847.1; NONHSAT096570; NR_133943.1
Alternative gene names: XLOC_003961; linc-IGFBP7-6; ENSG00000250340; RP11-577G20.1; ENSG00000250340.1; OTTHUMG00000161708.1; LINC02494; LOC105377671


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.7362 non-coding 
CPAT coding probability 9.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02494:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFBP7-3:3
3.1 lnc-IGFBP7-4:3
4.0 lnc-IGFBP7-4:3
4.1 lnc-IGFBP7-4:3
5.0 lnc-IGFBP7-4:3
5.1 LINC02494:4
5.2 LINC02494:8