Transcript: LINC02496:3

Basic information

LNCipedia transcript ID: LINC02496:3 
HGNC Gene Symbol: LINC02496    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2496
Ensembl Gene ID: ENSG00000249066
Ensembl Transcript ID: ENST00000509559
Location (hg19): chr4:61616304-61655717
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509559.1; RP11-593F5.2-001; OTTHUMT00000365892.1; NONHSAT096602
Alternative gene names: ENSG00000249066.1; RP11-593F5.2; OTTHUMG00000161732.1; LINC02496


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.7573 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02496:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LPHN3-4:1
4.0 lnc-LPHN3-4:1
4.1 lnc-LPHN3-4:1
5.0 lnc-LPHN3-4:1
5.1 LINC02496:2
5.2 LINC02496:3