Transcript: LINC02497:6

Basic information

LNCipedia transcript ID: LINC02497:6 
HGNC Gene Symbol: LINC02497    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2497
Ensembl Gene ID: ENSG00000251182
Ensembl Transcript ID: ENST00000515292
RefSeq ID: NR_125935
Location (hg19): chr4:31172766-31213297
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007502; ENST00000515292; ENST00000515292.1; RP11-617I14.1-001; OTTHUMT00000360375.1; NONHSAT095940; NR_125935.1
Alternative gene names: XLOC_003493; linc-DTHD1-13; ENSG00000251182; RP11-617I14.1; ENSG00000251182.1; OTTHUMG00000160369.1; LINC02497; LOC102723778


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.5314 non-coding 
CPAT coding probability 18.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02497:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH7-1:1
3.1 lnc-PCDH7-1:1
4.0 lnc-PCDH7-1:1
4.1 lnc-PCDH7-1:1
5.0 lnc-PCDH7-1:1
5.1 LINC02497:3
5.2 LINC02497:6