Transcript: LINC02500:4

Basic information

LNCipedia transcript ID: LINC02500:4 
LNCipedia gene ID: LINC02500
Location (hg19): chr4:182178898-182186252
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4075 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008673; NONHSAT099417
Alternative gene names: XLOC_004192; linc-AGA-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.1141 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02500:4 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCTD-4:1
3.1 lnc-DCTD-6:1
4.0 lnc-DCTD-6:1
4.1 lnc-DCTD-6:1
5.0 lnc-DCTD-6:1
5.1 LINC02500:2
5.2 LINC02500:4