Transcript: LINC02514:3

Basic information

LNCipedia transcript ID: LINC02514:3 
HGNC Gene Symbol: LINC02514    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2514
Ensembl Gene ID: ENSG00000250042
Ensembl Transcript ID: ENST00000509058
Location (hg19): chr4:188291802-188293075
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007694; ENST00000509058; ENST00000509058.1; RP11-91J3.2-001; OTTHUMT00000360094.1; NONHSAT099692
Alternative gene names: XLOC_003826; linc-ZFP42-6; ENSG00000250042; RP11-91J3.2; ENSG00000250042.1; OTTHUMG00000160297.1; LINC02514


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.5672 non-coding 
CPAT coding probability 6.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02514:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFP42-6:1
3.1 lnc-ZFP42-6:1
4.0 lnc-ZFP42-6:1
4.1 lnc-ZFP42-6:1
5.0 lnc-ZFP42-6:1
5.1 LINC02514:2
5.2 LINC02514:3