Transcript: LINC02517:10

Basic information

LNCipedia transcript ID: LINC02517:10 
HGNC Gene Symbol: LINC02517    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2517
Ensembl Gene ID: ENSG00000249145
Ensembl Transcript ID: ENST00000509453
Location (hg19): chr4:8321903-8325590
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007468; ENST00000509453; ENST00000509453.1; RP11-774O3.2-001; OTTHUMT00000359028.2; NONHSAT095086
Alternative gene names: XLOC_003444; linc-C4orf23-2; ENSG00000249145; RP11-774O3.2; ENSG00000249145.1; OTTHUMG00000160052.2; LINC02517; ENSG00000249145.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.899 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02517:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HTRA3-1:2
3.1 lnc-HTRA3-1:2
4.0 lnc-HTRA3-1:2
4.1 lnc-HTRA3-1:2
5.0 lnc-HTRA3-1:2
5.1 LINC02517:5
5.2 LINC02517:10