Transcript: LINC02518:5

Basic information

LNCipedia transcript ID: LINC02518:5 
HGNC Gene Symbol: LINC02518    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2518
Ensembl Gene ID: ENSG00000232316
Ensembl Transcript ID: ENST00000430728
Location (hg19): chr6:113749753-113753843
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011542; ENST00000430728; ENST00000430728.1; RP1-124C6.1-001; OTTHUMT00000041894.1; NONHSAT114542
Alternative gene names: XLOC_005809; linc-LAMA4-4; ENSG00000232316; RP1-124C6.1; ENSG00000232316.1; OTTHUMG00000015399.1; LINC02518


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.0596 non-coding 
CPAT coding probability 6.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02518:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC2-3:2
3.1 lnc-HDAC2-3:2
4.0 lnc-HDAC2-3:2
4.1 lnc-HDAC2-3:2
5.0 lnc-HDAC2-3:2
5.1 LINC02518:3
5.2 LINC02518:5