Transcript: LINC02528:5

Basic information

LNCipedia transcript ID: LINC02528:5 
HGNC Gene Symbol: LINC02528    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2528
Ensembl Gene ID: ENSG00000229922
Ensembl Transcript ID: ENST00000417800
Location (hg19): chr6:138266503-138293659
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011383; ENST00000417800; ENST00000417800.1; RP11-240M16.1-001; OTTHUMT00000042421.1; NONHSAT115196
Alternative gene names: XLOC_005480; linc-KIAA1244-2; ENSG00000229922; RP11-240M16.1; ENSG00000229922.1; OTTHUMG00000015667.1; ENSG00000229922.5; LINC02528


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -316.6692 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02528:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFAIP3-2:2
3.1 lnc-TNFAIP3-2:2
4.0 lnc-TNFAIP3-2:2
4.1 lnc-TNFAIP3-2:2
5.0 lnc-TNFAIP3-2:2
5.1 LINC02528:3
5.2 LINC02528:5