Transcript: LINC02530:4

Basic information

LNCipedia transcript ID: LINC02530:4 
HGNC Gene Symbol: LINC02530    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2530
Ensembl Gene ID: ENSG00000234015
Ensembl Transcript ID: ENST00000457945
Location (hg19): chr6:12583147-12585636
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 894 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011454; ENST00000457945; ENST00000457945.1; RP11-125M16.1-001; OTTHUMT00000039875.1
Alternative gene names: XLOC_005610; linc-C6orf105-1; ENSG00000234015; RP11-125M16.1; ENSG00000234015.1; OTTHUMG00000014269.1; LINC02530


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.6172 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02530:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D7-1:1
3.1 lnc-TBC1D7-1:1
4.0 lnc-TBC1D7-7:1
4.1 lnc-TBC1D7-7:1
5.0 lnc-TBC1D7-7:1
5.1 LINC02530:2
5.2 LINC02530:4