Transcript: LINC02531:3

Basic information

LNCipedia transcript ID: LINC02531:3 
HGNC Gene Symbol: LINC02531    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2531
Ensembl Gene ID: ENSG00000220908
Ensembl Transcript ID: ENST00000404689
Location (hg19): chr6:93432721-93433547
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 593 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000404689; ENST00000404689.2; RP11-127B16.1-001; OTTHUMT00000041541.1; NONHSAT114012
Alternative gene names: ENSG00000220908; RP11-127B16.1; ENSG00000220908.2; OTTHUMG00000015224.1; LINC02531


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 59.6985 non-coding 
CPAT coding probability 11.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02531:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EPHA7-1:1
3.1 lnc-EPHA7-1:1
4.0 lnc-EPHA7-1:1
4.1 lnc-EPHA7-1:1
5.0 lnc-EPHA7-1:1
5.1 LINC02531:2
5.2 LINC02531:3