Transcript: LINC02532:50

Basic information

LNCipedia transcript ID: LINC02532:50 
HGNC Gene Symbol: LINC02532    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2532
Ensembl Gene ID: ENSG00000235142
Ensembl Transcript ID: ENST00000415714
Location (hg19): chr6:107194960-107220168
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 260 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415714; ENST00000415714.1; RP1-60O19.1-001; OTTHUMT00000041676.1; NONHSAT114266
Alternative gene names: ENSG00000235142; RP1-60O19.1; ENSG00000235142.1; OTTHUMG00000015305.1; ENSG00000235142.3; ENSG00000235142.7; LINC02532


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.2692 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02532:50 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTN4IP1-2:6
3.1 lnc-RTN4IP1-2:6
4.0 lnc-RTN4IP1-2:6
4.1 lnc-RTN4IP1-2:6
5.0 lnc-RTN4IP1-2:6
5.1 LINC02532:23
5.2 LINC02532:50