Transcript: LINC02533:6

Basic information

LNCipedia transcript ID: LINC02533:6 
HGNC Gene Symbol: LINC02533    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2533
Ensembl Gene ID: ENSG00000260239
Ensembl Transcript ID: ENST00000563079
Location (hg19): chr6:4492041-4496003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2272 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563079.1; RP11-274H24.1-001; OTTHUMT00000431241.1; NONHSAT107440
Alternative gene names: ENSG00000260239.1; RP11-274H24.1; OTTHUMG00000175890.1; LINC02533


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3156 non-coding 
CPAT coding probability 6.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02533:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDYL-2:2
4.0 lnc-CDYL-2:2
4.1 lnc-CDYL-2:2
5.0 lnc-CDYL-2:2
5.1 LINC02533:3
5.2 LINC02533:6