Transcript: LINC02546:10

Basic information

LNCipedia transcript ID: LINC02546:10 
HGNC Gene Symbol: LINC02546    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2546
Ensembl Gene ID: ENSG00000255117
Ensembl Transcript ID: ENST00000528119
Location (hg19): chr11:29640349-29652211
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 801 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528119; ENST00000528119.1; RP5-1027O15.1-002; OTTHUMT00000387994.1; NONHSAT018568
Alternative gene names: ENSG00000255117; RP5-1027O15.1; ENSG00000255117.1; OTTHUMG00000166133.1; ENSG00000255117.5; LINC02546


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.356 non-coding 
CPAT coding probability 6.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02546:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSHB-1:3
3.1 lnc-FSHB-2:3
4.0 lnc-FSHB-2:3
4.1 lnc-FSHB-2:3
5.0 lnc-FSHB-2:3
5.1 LINC02546:4
5.2 LINC02546:10