Transcript: LINC02551:11

Basic information

LNCipedia transcript ID: LINC02551:11 
LNCipedia gene ID: LINC02551
RefSeq ID: NR_125382
Location (hg19): chr11:130736144-130740142
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3999 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125382; NR_125382.1
Alternative gene names: LOC103611081


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -128.0534 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02551:11 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-890B15.2.1-1:6
4.0 lnc-RP11-890B15.2.1-1:6
4.1 lnc-RP11-890B15.2.1-1:6
5.0 lnc-RP11-890B15.2.1-1:6
5.1 LINC02551:4
5.2 LINC02551:11