Transcript: LINC02552:18

Basic information

LNCipedia transcript ID: LINC02552:18 
HGNC Gene Symbol: LINC02552    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2552
Ensembl Gene ID: ENSG00000256422
Ensembl Transcript ID: ENST00000538641
Location (hg19): chr11:104410659-104480049
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 542 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538641; ENST00000538641.1; RP11-886D15.1-001; OTTHUMT00000387395.1; NONHSAT023932
Alternative gene names: ENSG00000256422; RP11-886D15.1; ENSG00000256422.1; OTTHUMG00000165998.1; ENSG00000256422.5; LINC02552


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.0415 non-coding 
CPAT coding probability 4.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02552:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CASP12-1:2
3.1 lnc-CASP12-1:2
4.0 lnc-CASP12-1:2
4.1 lnc-CASP12-1:2
5.0 lnc-CASP12-1:2
5.1 LINC02552:4
5.2 LINC02552:18