Transcript: LINC02558:5

Basic information

LNCipedia transcript ID: LINC02558:5 
HGNC Gene Symbol: LINC02558    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2558
Ensembl Gene ID: ENSG00000230866
Ensembl Transcript ID: ENST00000436395
Location (hg19): chr22:32366848-32369462
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 298 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029413; ENST00000436395; ENST00000436395.1; CTA-342B11.2-002; OTTHUMT00000315722.1; NONHSAT084928
Alternative gene names: XLOC_014212; linc-SLC5A1-1; ENSG00000230866; CTA-342B11.2; ENSG00000230866.1; OTTHUMG00000150005.1; LINC02558


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.904 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02558:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-YWHAH-2:3
3.1 lnc-YWHAH-2:3
4.0 lnc-YWHAH-2:3
4.1 lnc-YWHAH-2:3
5.0 lnc-YWHAH-2:3
5.1 LINC02558:3
5.2 LINC02558:5