Transcript: LINC02561:13

Basic information

LNCipedia transcript ID: LINC02561:13 
LNCipedia gene ID: LINC02561
Location (hg19): chr10:5307127-5333860
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5768 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224034.1|MICT00000036292.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 548.4918 coding 
CPAT coding probability 45.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02561:13 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AKR1CL1-1:3
5.0 lnc-AKR1CL1-1:3
5.1 LINC02561:3
5.2 LINC02561:13