Transcript: LINC02562:9

Basic information

LNCipedia transcript ID: LINC02562:9 
HGNC Gene Symbol: LINC02562    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2562
Ensembl Gene ID: ENSG00000260265
Ensembl Transcript ID: ENST00000567197
Location (hg19): chr4:76007135-76007705
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567197.1; RP11-44F21.5-001; OTTHUMT00000431582.1; NONHSAT096909
Alternative gene names: ENSG00000260265.1; RP11-44F21.5; OTTHUMG00000176161.1; LINC02562


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.0743 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02562:9 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BTC-6:4
4.0 lnc-BTC-6:4
4.1 lnc-BTC-6:4
5.0 lnc-BTC-6:4
5.1 LINC02562:5
5.2 LINC02562:9