Transcript: LINC02567:3

Basic information

LNCipedia transcript ID: LINC02567:3 
HGNC Gene Symbol: LINC02567    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2567
Ensembl Gene ID: ENSG00000237552
Ensembl Transcript ID: ENST00000427806
Location (hg19): chr1:77223809-77244952
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 448 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000550; ENST00000427806; ENST00000427806.1; RP11-415A20.1-001; OTTHUMT00000026685.1
Alternative gene names: XLOC_000873; linc-ASB17; ENSG00000237552; RP11-415A20.1; ENSG00000237552.1; OTTHUMG00000009684.1; AC099060.1; LINC02567


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.454 non-coding 
CPAT coding probability 8.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02567:3 no no no no

Available literature

  1. Brevik (2016), Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder., Am. J. Med. Genet. B Neuropsychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIGK-1:1
3.1 lnc-PIGK-2:1
4.0 lnc-PIGK-2:1
4.1 lnc-PIGK-2:1
5.0 lnc-PIGK-2:1
5.1 LINC02567:2
5.2 LINC02567:3