Transcript: LINC02571:3

Basic information

LNCipedia transcript ID: LINC02571:3 
HGNC Gene Symbol: LINC02571    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2571
Ensembl Gene ID: ENSG00000256166
Ensembl Transcript ID: ENST00000539514
Location (hg19): chr6:31261685-31269419
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 536 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539514; ENST00000539514.1; XXbac-BPG248L24.13-001; OTTHUMT00000401437.1; NONHSAT108750
Alternative gene names: ENSG00000256166; XXbac-BPG248L24.13; ENSG00000256166.1; OTTHUMG00000168870.1; AL671883.2; LINC02571


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8371 non-coding 
CPAT coding probability 23.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02571:3 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HLA-C-1:1
3.1 lnc-HLA-C-1:1
4.0 lnc-HLA-C-1:1
4.1 lnc-HLA-C-1:1
5.0 lnc-HLA-C-1:1
5.1 LINC02571:2
5.2 LINC02571:3