Transcript: LINC02575:9

Basic information

LNCipedia transcript ID: LINC02575:9 
HGNC Gene Symbol: LINC02575    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2575
Ensembl Gene ID: ENSG00000228709
Ensembl Transcript ID: ENST00000449713
Location (hg19): chr21:45905460-45910171
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 912 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449713; ENST00000449713.1; AP001065.15-001; OTTHUMT00000195852.1
Alternative gene names: ENSG00000228709; AP001065.15; ENSG00000228709.1; OTTHUMG00000086925.1; AP001065.1; LINC02575


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.779 non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02575:9 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC3-1:1
3.1 lnc-LRRC3-1:1
4.0 lnc-C21orf90-5:4
4.1 lnc-C21orf90-5:4
5.0 lnc-C21orf90-5:4
5.1 LINC02575:5
5.2 LINC02575:9