Transcript: LINC02577:22

Basic information

LNCipedia transcript ID: LINC02577:22 
HGNC Gene Symbol: LINC02577    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2577
Ensembl Gene ID: ENSG00000228742
Ensembl Transcript ID: ENST00000470135
Location (hg19): chr7:106415522-106421388
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 673 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013055; ENST00000470135; ENST00000470135.1; RP5-884M6.1-001; OTTHUMT00000349230.1; NONHSAT122661; ENST00000470135.5
Alternative gene names: XLOC_006200; linc-PIK3CG-1; ENSG00000228742; RP5-884M6.1; ENSG00000228742.4; OTTHUMG00000157590.2; ENSG00000228742.5; ENSG00000228742.9; AC002384.1; LINC02577


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.5584 non-coding 
CPAT coding probability 24.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02577:22 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIK3CG-2:2
3.1 lnc-PIK3CG-2:2
4.0 lnc-PIK3CG-2:2
4.1 lnc-PIK3CG-2:2
5.0 lnc-PIK3CG-2:2
5.1 LINC02577:10
5.2 LINC02577:22