Transcript: LINC02578:3

Basic information

LNCipedia transcript ID: LINC02578:3 
HGNC Gene Symbol: LINC02578    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2578
Ensembl Gene ID: ENSG00000235201
Ensembl Transcript ID: ENST00000456032
Location (hg19): chr9:121502841-121507590
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 256 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015743; ENST00000456032; ENST00000456032.1; RP11-127L21.1-001; OTTHUMT00000053813.1; NONHSAT134484
Alternative gene names: XLOC_007540; linc-CEP110-11; ENSG00000235201; RP11-127L21.1; ENSG00000235201.1; OTTHUMG00000020567.1; AL589703.1; LINC02578


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.2131 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02578:3 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-295D22.1.1-7:1
3.1 lnc-RP11-295D22.1.1-8:1
4.0 lnc-RP11-295D22.1.1-8:1
4.1 lnc-RP11-295D22.1.1-8:1
5.0 lnc-RP11-295D22.1.1-8:1
5.1 LINC02578:2
5.2 LINC02578:3