Transcript: LINC02579:8

Basic information

LNCipedia transcript ID: LINC02579:8 
HGNC Gene Symbol: LINC02579    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2579
Ensembl Gene ID: ENSG00000233694
Ensembl Transcript ID: ENST00000445738
Location (hg19): chr2:64834109-64843133
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1386 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445738; TCONS_00002908; ENST00000445738.1; AC007365.1-001; OTTHUMT00000327323.1; NONHSAT071124; ENST00000445738.5
Alternative gene names: ENSG00000233694; XLOC_001498; linc-SLC1A4-2; AC007365.1; ENSG00000233694.1; OTTHUMG00000152679.1; ENSG00000233694.5; AC007365.3; LINC02579


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.7795 non-coding 
CPAT coding probability 11.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02579:8 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AFTPH-1:1
3.1 lnc-AFTPH-1:1
4.0 lnc-AFTPH-1:1
4.1 lnc-AFTPH-1:1
5.0 lnc-AFTPH-1:1
5.1 LINC02579:2
5.2 LINC02579:8