Transcript: LINC02580:11

Basic information

LNCipedia transcript ID: LINC02580:11 
LNCipedia gene ID: LINC02580
Location (hg19): chr2:43319347-43370253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1115 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230587.1|FTMT20500001056.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -112.1499 non-coding 
CPAT coding probability 9.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02580:11 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-THADA-1:6
5.0 lnc-THADA-1:6
5.1 LINC02580:4
5.2 LINC02580:11