Transcript: LINC02580:13

Basic information

LNCipedia transcript ID: LINC02580:13 
LNCipedia gene ID: LINC02580
Location (hg19): chr2:43355972-43370236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004230; NONHSAT070381
Alternative gene names: XLOC_002070; linc-HAAO-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.3486 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02580:13 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THADA-1:1
3.1 lnc-THADA-1:1
4.0 lnc-THADA-1:1
4.1 lnc-THADA-1:1
5.0 lnc-THADA-1:1
5.1 LINC02580:6
5.2 LINC02580:13